*Ma R, Cai TT and Li H (2020): Global and Simultaneous Hypothesis Testing for High-Dimensional Logistic Regression Models. Journal of American Statistical Association, accepted.
*Ma R, Cai TT and Li H (2020): Optimal Permutation Recovery in Permuted Monotone Matrix Model. Journal of American Statistical Association, accepted.
*Wang S, Cai TT and Li H (2020): Optimal estimation of Wasserstein distance on a tree with an application to microbiome studies. Journal of American Statistical Association, accepted.
*Wang S, Cai TT and Li H (2020): Hypothesis Testing for Phylogenetic Composition: A Minimum-cost Flow Perspective. Biometrika, accepted.
*Cao Y, Zhang A and Li H (2020): Multi-sample estimation of bacterial composition matrix in metagenomics data. Biometrika, 107:75-92.
*Ma R, Cai TT and Li H (2020): Optimal Estimation of Bacterial Growth Rates Based on Permuted Monotone Matrix. Biometrika, accepted.
Bittinger K, C Zhao, Y Li, E Ford, E Friedman, J Ni, C Kulkarni, J Cai, Y Tian, Q Liu, A Patterson, D Sarkar, Siu Hung Joshua Chan, C Maranas, A Saha-Shah, P Lund, B Garcia, L Mattei, J Gerber, M Elovitz, A Kelly, P DeRusso, D Kim, C Hofstaedter, M Goulian, Li H, F Bushman, B Zemel, Wu G (2020): Bacterial colonization reprograms the neonatal gut metabolome. Nature Microbiology, 5:838-847.
Bushman FD, Conrad M, Ren Y, Zhao C, Gu C, Petucci C, Kim M-S, Abbas A, Downes KJ, Devas N, Mattei LM, Breton J, Kelsen J, Marakos S, Galgano A, Kachelries K, Erlichman J, Hart JL, Moraskie M, Kim D, Zhang H, Hofstaedter CE, Wu GD, Lewis JD, Zackular JP, Li H , Bittinger K and Baldassano R (2020): Multi-omic analysis of the interaction between Clostridioides difficile infection and pediatric inflammatory bowel disease. Cell Host & Microbe, in press.
Sheng Z, Qiu C, Liu H, Gluck C, Hsu J, He J, Hsu CY, Sha D, Weir MR, Isakova T, Raj DS, Ricon-Choles H, Feldman HI, Townsend R, Li H , Susztak K (2020): Integrated genetic-epigenetic analysis supports a causal role for inflammation in diabetic kidney disease pathogenesis. Proceedings of the National Academy of Sciences, accepted.
Yarmarkovich M, Alvin Farrell, Artemio Sison III, Moreno Di Marco, Pichai Raman, Joshua Parris, Dimitri S Monos, Lee H , Stefan Stevanovic, John M Maris (2020): Immunogenicity and Immune Silence in Human Cancer. Frontiers in Immunology, 11:69.
Cullen CM, Aneja KK, Beyhan S, Cho CE, Woloszynek S, Convertino M, McCoy SJ, Zhang Y, Anderson MZ, Alvarez-Ponce D, Smirnova E, Karstens L, Dorrestein PC, Li H, Sen Gupta A, Cheung K, Powers JG, Zhao Z, Rosen G (2020): Emerging priorities for microbiome research. Frontiers in Microbiology, 11:136.